SubtiBank SubtiBank
ywoD [2018-10-04 20:35:14]
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ywoD [2018-10-04 20:35:14]

similar to transporter
locus
BSU36480
pI
10.22
mw
48.49 kDa
protein length
452 aa Sequence Blast
gene length
1356 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.5|Newly identified sporulation proteins (based on transcription profiling)]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    3,753,933 → 3,755,291

    The protein

    Protein family

  • major facilitator superfamily (according to Swiss-Prot)

    • [SW|Localization]

  • cell membrane (according to Swiss-Prot)

    • Expression and Regulation

    Operons

    genes
    [gene|42FD1230682897172C3D4EA09980E566835EEF34|ywoB]-[gene|ECBA7A0C8E705A464ACF627EBAFF7482EAEE34F2|ywoC]-[gene|856247843F1073833D51F82AB2928CCDC0DA3E64|ywoD]
    description
    [Pubmed|21856850]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|21856850], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

    • regulatory mechanism

  • [protein|6A074CE9AD98A2751A216A2EA8156ACE6FFC7280|YtrA]: repression, [Pubmed|21856850], in [regulon|6A074CE9AD98A2751A216A2EA8156ACE6FFC7280|YtrA regulon]

    • regulation

  • induced by ramoplanin ([protein|search|YtrA]) [Pubmed|21856850]
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    Biological materials

    Mutant

  • MGNA-A921 (ywoD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/921 NBRP B. subtilis, Japan]
  • BKE36480 (Δ[gene|856247843F1073833D51F82AB2928CCDC0DA3E64|ywoD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE36480 BGSC], [Pubmed|28189581], upstream reverse: _UP1_AGCTCGGCTTTTTTTCGATA, downstream forward: _UP4_TAAGAAAGAGACGGGCTCTG
  • BKK36480 (Δ[gene|856247843F1073833D51F82AB2928CCDC0DA3E64|ywoD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK36480 BGSC], [Pubmed|28189581], upstream reverse: _UP1_AGCTCGGCTTTTTTTCGATA, downstream forward: _UP4_TAAGAAAGAGACGGGCTCTG